Figure S1 . (E) qPCR validation of differential gene expression between mESCs, DIV3, and DIV4 organoids, n = 4. p value ∗<0.05, ∗∗<0.01, ∗∗∗∗<0.0001, ns = not significant. Significance was assessed by two-way ANOVA followed by Tukey’s multiple comparisons test. Data are represented as mean ± SD. (F) Immunostaining for the pluripotency markers OCT4 and SOX2 reveals the specification of an outer layer of OCT4-/SOX2-/ECAD+ ectoderm lineage cells at DIV4. Scale, 50 μm, n ≥ 3. (G and H) scRNA-seq of DIV8 organoids shows the formation of Sox2+/Pax8+ otic-epibranchial progenitor domain cells (OEPD), in addition to mesenchyme, neural precursor cells (NPCs)/glia, neurons, and surface ectoderm (SE). (I and J) Validation of TWIST1/2+/ECAD-SOX2- mesenchymal cells and TUBB3+ neurons at DIV8. (K and L) EPCAM+/SOX2+/PAX8+ OEPD and EPCAM+/P63+ SE develop adjacently but do not overlap. Scale = 50μm, n ≥ 3. (M) While the overall level of Epcam expression does not change between DIV4 and DIV7, Pax8 and Trp63 are rapidly induced between DIV4 and DIV5. PPE, pre-placodal ectoderm; n = 3. p value ∗<0.05, ∗∗∗∗<0.0001. Significance was assessed by two-way ANOVA followed by Tukey’s multiple comparisons test. Data are represented as mean ± SD. " width="100%" height="100%">
Journal: iScience
Article Title: A developmental atlas of mouse vestibular-like inner ear organoids
doi: 10.1016/j.isci.2025.111817
Figure Lengend Snippet: scRNA-seq of DIV3, DIV4 and DIV8 inner ear organoids (A and B) scRNA-seq of DIV3 organoids reveals the transition of mESCs to ectoderm and neural ectoderm, as well as a small population of mesendoderm, as demonstrated by select marker gene expression. (C and D) scRNA-seq of DIV4 organoids reveals the further transition of ectoderm to non-neural ectoderm, as demonstrated by select marker gene expression. See also Figure S1 . (E) qPCR validation of differential gene expression between mESCs, DIV3, and DIV4 organoids, n = 4. p value ∗<0.05, ∗∗<0.01, ∗∗∗∗<0.0001, ns = not significant. Significance was assessed by two-way ANOVA followed by Tukey’s multiple comparisons test. Data are represented as mean ± SD. (F) Immunostaining for the pluripotency markers OCT4 and SOX2 reveals the specification of an outer layer of OCT4-/SOX2-/ECAD+ ectoderm lineage cells at DIV4. Scale, 50 μm, n ≥ 3. (G and H) scRNA-seq of DIV8 organoids shows the formation of Sox2+/Pax8+ otic-epibranchial progenitor domain cells (OEPD), in addition to mesenchyme, neural precursor cells (NPCs)/glia, neurons, and surface ectoderm (SE). (I and J) Validation of TWIST1/2+/ECAD-SOX2- mesenchymal cells and TUBB3+ neurons at DIV8. (K and L) EPCAM+/SOX2+/PAX8+ OEPD and EPCAM+/P63+ SE develop adjacently but do not overlap. Scale = 50μm, n ≥ 3. (M) While the overall level of Epcam expression does not change between DIV4 and DIV7, Pax8 and Trp63 are rapidly induced between DIV4 and DIV5. PPE, pre-placodal ectoderm; n = 3. p value ∗<0.05, ∗∗∗∗<0.0001. Significance was assessed by two-way ANOVA followed by Tukey’s multiple comparisons test. Data are represented as mean ± SD.
Article Snippet: On DIV8, organoids were washed with 1X PBS and transferred to maturation media containing 1% matrigel and 3 μM CHIR99021 (a GSK-3α/β inhibitor, Selleckchem) to induce Wnt signaling.
Techniques: Marker, Gene Expression, Biomarker Discovery, Immunostaining, Expressing